RNA Modification

This volume contains up-to-date information and protocol on biological investigations of RNA modifications, in particular the relationship between various RNA modifications and gene expression.

Chuan He (Volume editor)

9780128021927

Hardback, published 4 August 2015

408 pages
22.9 x 15.1 x 2.7 cm, 0.86 kg

Praise for the Series: "Should be on the shelves of all libraries in the world as a whole collection." --Chemistry in Industry "The work most often consulted in the lab." --Enzymologia "The Methods in Enzymology series represents the gold-standard." --Neuroscience

RNA Modification provides a useful examination of the science and its role in biological regulation, the current frontier of life science research, and includes various RNA modications and their role in gene expression. It represents the most up-to-date knowledge and protocols available today.

1. Methodology For The High-Throughput Identification and Characterization of tRNA Variants that are Substrates for a tRNA Decay Pathway
Matthew J. Payea, Michael P. Guy, and Eric M. Phizicky
2. Nucleoside Analysis by Hydrophilic Interaction Liquid Chromatography Coupled with Mass Spectrometry
Yuriko Sakaguchi, Kenjyo Miyauchi, Byeong-il Kang, and Tsutomu Suzuki
3. A Platform for Discovery and Quantification of Modified Ribonucleosides in RNA: Application to Stress-Induced Reprogramming of tRNA Modifications
Weiling Maggie Cai, Yok Hian Chionh, Fabian Hia, Chen Gu, Stefanie Kellner, Megan E. McBee, Chee Sheng Ng, Yan Ling Joy Pang, Erin G. Prestwich, Kok Seong Lim, I. Ramesh Babu, Thomas J. Begley and Peter C. Dedon
4. Recognition of Specified RNA Modifications by the Innate Immune System
Tatjana Eigenbrod, Patrick Keller, Steffen Kaiser, Katharina Rimbach, Alexander H. Dalpke and Mark Helm
5. Kinetic Analysis of tRNA Methyl Transferases
Ya-Ming Hou and Isao Masuda
6. Preparation of Human Nuclear RNA m6A Methyltransferases and Demethylases and Biochemical Characterization of Their Catalytic Activity
Jianzhao Liu, Yanan Yue, and Chuan He
7. Transcriptome-Wide Mapping of N6-Methyladenosine by m6A-Seq
Dan Dominissini, Sharon Moshitch Moshkovitz, Ninette Amariglio and Gideon Rechavi
8. Probing RNA Modification Status at Single-Nucleotide Resolution in Total RNA
Nian Liu and Tao Pan
9. High-resolution mapping of N6-methyladenosine in transcriptome and Genome Using a Photo-Crosslinking-Assisted Strategy
Kai Chen, Guan-Zheng Luo and Chuan He
10. Pseudouridine in Mrna: Incorporation, Detection and Recoding
Guowei Wu, Chao Huang and Yi-Tao Yu
11. Pseudo-Seq: Genome-Wide Detection of Pseudouridine Modifications in RNA
T homas M. Carlile, Maria F. Rojas-Duran and Wendy V. Gilbert
12. Pseudouridine Chemical Labeling and Profiling
Xiaoyu Li, Shiqing Ma and Chengqi Yi
12. Experimental Approaches for Target Profiling RNA Cytosine Methyltransferases
Vahid Khoddami, Archana Yerra, and Bradley R. Cairns
13. RNA 5-Methylcytosine Analysis by Bisulfite Sequencing
Matthias Schaefer
14. Biochemical and transcriptome-wide identification of A-to-I RNA editing sites by ICE-seq
Shunpei Okada, Masayuki Sakurai, Hiroki Ueda, and Tsutomu Suzuki
15. Radical SAM-Mediated Methylation of Ribosomal RNA
Vanja Stojkovic and Danica Galonic Fujimori

Subject Areas: Molecular biology [PSD], Biochemistry [PSB], Biophysics [PHVN], Science: general issues [PD]