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Equilibria and Kinetics of Biological Macromolecules
Prof. Jan Hermans (Author), Barry Lentz (Author)
9781118479704, Wiley
Hardback, published 28 January 2014
528 pages
24 x 16.5 x 2.8 cm, 0.857 kg
Progressively builds a deep understanding of macromolecular behavior Based on each of the authors' roughly forty years of biophysics research and teaching experience, this text instills readers with a deep understanding of the biophysics of macromolecules. It sets a solid foundation in the basics by beginning with core physical concepts such as thermodynamics, quantum chemical models, molecular structure and interactions, and water and the hydrophobic effect. Next, the book examines statistical mechanics, protein-ligand binding, and conformational stability. Finally, the authors address kinetics and equilibria, exploring underlying theory, protein folding, and stochastic models. With its strong emphasis on molecular interactions, Equilibria and Kinetics of Biological Macromolecules offers new insights and perspectives on proteins and other macromolecules. The text features coverage of: Suggested readings at the end of each chapter include original research papers, reviews and monographs, enabling readers to explore individual topics in greater depth. At the end of the text, ten appendices offer refreshers on mathematical treatments, including probability, computational methods, Poisson equations, and defining molecular boundaries. With its classroom-tested pedagogical approach, Equilibria and Kinetics of Biological Macromolecules is recommended as a graduate-level textbook for biophysics courses and as a reference for researchers who want to strengthen their understanding of macromolecular behavior.
Preface xix Acknowledgments xxi PART 1 BASIC PRINCIPLES 1 1. Thermodynamics 3 2. Four Basic Quantum Mechanical Models of Nuclear and Electronic Motion: A Synopsis 35 3. Molecular Structure and Interactions 51 4. Water and the Hydrophobic Effect 77 PART 2 STATISTICAL MECHANICS: THE MOLECULAR BASIS OF THERMODYNAMICS 91 5. The Molecular Partition Function 93 6. System Ensembles and Partition Functions 111 7. Sampling Molecular Systems with Simulations 137 PART 3 BINDING TO MACROMOLECULES 161 8. Binding Equilibria 163 9. Thermodynamics of Molecular Interactions 185 10. Elements of Statistical Mechanics of Liquids and Solutions 197 11. Analysis of Binding Equilibria in Terms of Partition Functions 213 12. Coupled Equilibria 223 13. Allosteric Function 239 14. Charged Groups: Binding of Hydrogen Ions, Solvation, and Charge–Charge Interactions 255 PART 4 CONFORMATIONAL STABILITY AND CONFORMATION CHANGE 277 15. Some Elements of Polymer Physics 279 16. Helix-Coil Equilibria 291 17. Protein Unfolding Equilibria 311 18. Elasticity of Biological Materials 347 PART 5 KINETICS AND IRREVERSIBLE PROCESSES 357 19. Kinetics 359 20. Kinetics of Protein Folding 389 21. Irreversible and Stochastic Processes 415 APPENDICES 437 Index 491
Subject Areas: Chemistry [PN]
