{"product_id":"deterministic-versus-stochastic-modelling-in-biochemistry-and-systems-biology-hardback-9781907568626","title":"Deterministic Versus Stochastic Modelling in Biochemistry and Systems Biology (Hardback) 9781907568626","description":"\u003cfont face=\"Georgia\"\u003e\r\n\u003cp\u003e\u003cfont size=\"6\"\u003eDeterministic Versus Stochastic Modelling in Biochemistry and Systems Biology\u003c\/font\u003e\u003cbr\u003e\r\n\r\n\r\n\r\n\r\n\r\n\u003c\/p\u003e\n\u003cp\u003e\u003cfont size=\"4\"\u003ePaola Lecca (Author), Ian Laurenzi (Author), Ferenc Jordan (Author)\u003c\/font\u003e\u003c\/p\u003e\r\n\r\n\u003cp\u003e\u003cfont size=\"3\"\u003e9781907568626, Elsevier Science\u003c\/font\u003e\u003c\/p\u003e\r\n\r\n\u003cp\u003e\u003cfont size=\"3\"\u003eHardback, published 9 April 2013\u003c\/font\u003e\u003c\/p\u003e\r\n\r\n\u003cp\u003e\u003cfont size=\"3\"\u003e390 pages\u003cbr\u003e23.3 x 15.6 x 2.6 cm, 1.01 kg\u003c\/font\u003e\u003c\/p\u003e\r\n\r\n\r\n\r\n\r\n\r\n\u003cp align=\"justify\"\u003e\u003cstrong\u003e\u003cfont size=\"3\"\u003eStochastic kinetic methods are currently considered to be the most realistic and elegant means of representing and simulating the dynamics of biochemical and biological networks. Deterministic versus stochastic modelling in biochemistry and systems biology introduces and critically reviews the deterministic and stochastic foundations of biochemical kinetics, covering applied stochastic process theory for application in the field of modelling and simulation of biological processes at the molecular scale. Following an overview of deterministic chemical kinetics and the stochastic approach to biochemical kinetics, the book goes onto discuss the specifics of stochastic simulation algorithms, modelling in systems biology and the structure of biochemical models. Later chapters cover reaction-diffusion systems, and provide an analysis of the Kinfer and BlenX software systems. The final chapter looks at simulation of ecodynamics and food web dynamics.\u003c\/font\u003e\u003c\/strong\u003e\u003c\/p\u003e\r\n\r\n\u003cp\u003e\u003cfont size=\"3\"\u003e\u003cp\u003eList of figures\u003c\/p\u003e \u003cp\u003eList of tables\u003c\/p\u003e \u003cp\u003ePreface\u003c\/p\u003e \u003cp\u003eAbout the Authors and Contributors\u003c\/p\u003e \u003cp\u003eChapter 1: Deterministic chemical kinetics\u003c\/p\u003e \u003cp\u003eAbstract:\u003c\/p\u003e \u003cp\u003e1.1 Determinism and Chemistry\u003c\/p\u003e \u003cp\u003e1.2 The Material Balance\u003c\/p\u003e \u003cp\u003e1.3 The Rate Law\u003c\/p\u003e \u003cp\u003e1.4 Solving the Conservation Equations\u003c\/p\u003e \u003cp\u003e1.5 Simple Reaction Mechanisms\u003c\/p\u003e \u003cp\u003e1.6 The Law of Mass Action\u003c\/p\u003e \u003cp\u003e1.7 Conclusions\u003c\/p\u003e \u003cp\u003eChapter 2: The stochastic approach to biochemical kinetics\u003c\/p\u003e \u003cp\u003eAbstract:\u003c\/p\u003e \u003cp\u003e2.1 Introduction\u003c\/p\u003e \u003cp\u003e2.2 The chemical master equation\u003c\/p\u003e \u003cp\u003e2.3 Solution of the Master Equation\u003c\/p\u003e \u003cp\u003eThe irreversible reaction A ? B\u003c\/p\u003e \u003cp\u003eThe Irreversible Reaction A + B ? C\u003c\/p\u003e \u003cp\u003eOther Irreversible Bimolecular Reactions\u003c\/p\u003e \u003cp\u003eThe reversible reaction A + B  C at equilibrium\u003c\/p\u003e \u003cp\u003eOther reversible bimolecular reactions at equilibrium\u003c\/p\u003e \u003cp\u003e2.4 The relationship between the deterministic and stochastic formalisms\u003c\/p\u003e \u003cp\u003eChapter 3: The exact stochastic simulation algorithms\u003c\/p\u003e \u003cp\u003eAbstract.\u003c\/p\u003e \u003cp\u003e3.1 Introduction\u003c\/p\u003e \u003cp\u003e3.2 The reaction probability density function\u003c\/p\u003e \u003cp\u003e3.3 The stochastic simulation algorithms\u003c\/p\u003e \u003cp\u003e3.4 Case studies\u003c\/p\u003e \u003cp\u003e3.5 Caveats regarding the modeling of living systems\u003c\/p\u003e \u003cp\u003eChapter 4: Modelling in systems biology\u003c\/p\u003e \u003cp\u003eAbstract\u003c\/p\u003e \u003cp\u003e4.1 What is biological modeling\u003c\/p\u003e \u003cp\u003e4.2 System Biology\u003c\/p\u003e \u003cp\u003e4.3 Complexity of a biological system\u003c\/p\u003e \u003cp\u003e4.4 Stochastic modeling approach\u003c\/p\u003e \u003cp\u003e4.5 Formalizing complexity\u003c\/p\u003e \u003cp\u003eChapter 5: The structure of biochemical models\u003c\/p\u003e \u003cp\u003eAbstract\u003c\/p\u003e \u003cp\u003e5.1 Classification of biological processes and mathematical formalism\u003c\/p\u003e \u003cp\u003e5.2 Spatially Homogeneous Models\u003c\/p\u003e \u003cp\u003e5.3 Variants of the SSA for non-Markovian and non-homogeneous processes\u003c\/p\u003e \u003cp\u003eChapter 6: Reaction-diffusion systems\u003c\/p\u003e \u003cp\u003eAbstract\u003c\/p\u003e \u003cp\u003e6.1 Introduction\u003c\/p\u003e \u003cp\u003e6.2 A generalization of the Fick’s law\u003c\/p\u003e \u003cp\u003e6.3 The optimal size of the system’s subvolumes\u003c\/p\u003e \u003cp\u003e6.4 The algorithm and data structure\u003c\/p\u003e \u003cp\u003e6.5 Case study 1: chaperone-assisted folding\u003c\/p\u003e \u003cp\u003e6.6 Case study 2: modeling the formation of Bicoid gradient\u003c\/p\u003e \u003cp\u003e6.7 Conclusions and future directions\u003c\/p\u003e \u003cp\u003eChapter 7: KInfer: a tool for model calibration\u003c\/p\u003e \u003cp\u003eAbstract\u003c\/p\u003e \u003cp\u003e7.1 Introduction\u003c\/p\u003e \u003cp\u003e7.2 The model for inference\u003c\/p\u003e \u003cp\u003e7.3 Synthetic case study: buffering SERCA pump\u003c\/p\u003e \u003cp\u003e7.4 Real case studies\u003c\/p\u003e \u003cp\u003e7.5 Glucose metabolisms of Lactococcus lactis\u003c\/p\u003e \u003cp\u003e7.6 Discussion\u003c\/p\u003e \u003cp\u003eChapter 8: Modelling living systems with BlenX\u003c\/p\u003e \u003cp\u003eAbstract\u003c\/p\u003e \u003cp\u003e8.1 Deterministic vs stochastic approach in systems biology\u003c\/p\u003e \u003cp\u003e8.2 The BlenX language\u003c\/p\u003e \u003cp\u003e8.3 The ubiquitin-proteasome system\u003c\/p\u003e \u003cp\u003e8.4 A predator-prey model\u003c\/p\u003e \u003cp\u003e8.5 Conclusions\u003c\/p\u003e \u003cp\u003eChapter 9: Simulation of ecodynamics: key nodes in food webs\u003c\/p\u003e \u003cp\u003eAbstract\u003c\/p\u003e \u003cp\u003e9.1 Systems ecology\u003c\/p\u003e \u003cp\u003e9.2 Ecological interaction networks\u003c\/p\u003e \u003cp\u003e9.3 Pattern and process\u003c\/p\u003e \u003cp\u003e9.4 Food web dynamics: simulation and sensitivity analysis\u003c\/p\u003e \u003cp\u003eNotes\u003c\/p\u003e \u003cp\u003eIndex\u003c\/p\u003e\u003c\/font\u003e\u003c\/p\u003e\r\n\r\n\u003cp\u003e\u003cfont size=\"3\"\u003eSubject Areas: Biochemistry [\u003ca title=\"See our other books on Biochemistry\" href=\"https:\/\/freshlyprintedbooks.co.uk\/search?q=%22Biochemistry%20%5BPSB%5D%22\"\u003ePSB\u003c\/a\u003e], Stochastics [\u003ca title=\"See our other books on Stochastics\" href=\"https:\/\/freshlyprintedbooks.co.uk\/search?q=%22Stochastics%20%5BPBWL%5D%22\"\u003ePBWL\u003c\/a\u003e]\u003c\/font\u003e\u003c\/p\u003e\r\n\r\n\r\n\u003c\/font\u003e","brand":"Woodhead Publishing","offers":[{"title":"Default Title","offer_id":46651781349656,"sku":"9781907568626","price":104.89,"currency_code":"GBP","in_stock":false}],"thumbnail_url":"\/\/cdn.shopify.com\/s\/files\/1\/0730\/2037\/5320\/products\/9781907568626_301cc78c-ef98-480d-a0dc-c2b8478858b8.jpg?v=1695018019","url":"https:\/\/freshlyprintedbooks.co.uk\/products\/deterministic-versus-stochastic-modelling-in-biochemistry-and-systems-biology-hardback-9781907568626","provider":"Freshly Printed Books","version":"1.0","type":"link"}